Hi Peter,
It looks to me like there are versions both, with the Tool Shed version
having the more recent date stamp. But if those extra functions are not
needed, then yes, you are correct, the version included in the
distribution would be enough.
Please send corrections if I have any of this
On Thursday, February 9, 2012, Jennifer Jackson wrote:
> Hi David,
>
> It sounds like you are using the public Galaxy server at
> http://usegalaxy.org (http://main.g2.bx.psu.edu)? A
> BLAST service is not available on the public instance.
> (Megablast is available, but for NGS query data versus
>
Hi David,
It sounds like you are using the public Galaxy server at
http://usegalaxy.org (http://main.g2.bx.psu.edu)? A BLAST service is not
available on the public instance. (Megablast is available, but for NGS
query data versus a specific set of target native genomes).
Bjoern is correct tha
Hi Victor,
I also wanted to get the count reads but it did not work with
Cufflinks. You can use GenomicRanges package (Bioconductor). I am also
using Deseq (negative binomial distribution) to detect the
differentially expressed genes from time series data. You can find it
here http://b
Hello Bernd,
This wiki explains the organization of roles in Galaxy:
http://wiki.g2.bx.psu.edu/Learn/Security%20Features
And if you need help with the Admin UI, this wiki can help:
http://wiki.g2.bx.psu.edu/Admin/Interface
Most administration help located in the wiki organized under this sectio
Hi David,
at first you need to predict some genes. In the tool-shed you will find
some gene prediction tools. With these gene you can search against local
BLAST-databases using the NCBI BLAST+ tools, included in Main-Galaxy.
Hope that helps,
Bjoern
> Hi, Everybody,
>
> I uploaded two complete g
Hi, Everybody,
I uploaded two complete genome sequences and hope to BLAST homologs from
both genome.
Does anybody know how to do BLAST search on galaxy?
Thanks
David
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