I have been unable to upload data files into Galaxy Main since Friday 18th May
2012. Today is my fourth day of attempting uploads. Refreshing and leaving the
files to upload overnight does not work.
Although Jennifer has stated the bug has been fixed at 5.30pm today I am still
unable to upload d
Hello Megan,
Are you still experiencing problems now? Galaxy may have been busy
immediately following the resolution of the cluster problem, although
your problem does appear to be unrelated.
It sounds like you are uploading file through a browser. A better choice
would be to use FTP. This i
Hi Jiwen,
The short answer is that if your data is not pairing, then there may be
a quality problem. Or, there may be a problem with the TopHat mapping
run. The best advice is to take a sample of your data and experiment
with some TopHat alternate parameters (using the protocol suggestions in
Hi Antony,
Sorry for the delayed reply. Are you still having problems with Pileup?
This isn't correct behavior - quality scores should be unchanged, which
means they are most likely Phred33+. Can you reproduce this on the
public main Galaxy instance now (Samtools has been updated since your
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