[galaxy-user] Datasets permanently deleted

Dear all, In the menu "User" -> "Saved Datasets", all datasets are listed even if some of them have been deleted permanently by deleting its history. So, it's possible to copy an deleted dataset in the current history and that is confusing for users. Do you have any solution to drop these dat

Re: [galaxy-user] Datasets permanently deleted

Sarah, I can't reproduce this behavior on a local instance or on our public server. This raises a couple questions: Are you using the most recent version of Galaxy? Can you reproduce this behavior on our public server (usegalaxy.org)? Thanks, J. On Jul 31, 2012, at 8:13 AM, Sarah Maman wrote

Re: [galaxy-user] Running Cufflinks on Bacterial RNAseq data

Hello Rachel, When datasets are in a grey "waiting to run" state this indicates that they are in the queue and in line to run. For the majority of cases, including yours, leaving the job alone and allowing it to run is the correct option. The missing metadata only means that the result has not

Re: [galaxy-user] Job En-queued, but not running

Hello Vijay, When the public Main Galaxy server is busy, jobs will be in a grey "waiting to run" state while they are in the queue waiting to run. How long this takes can vary. Allowing the job to stay in this state (not deleting/restarting) is the best option to preserve your place in line.

[galaxy-user] reference genome uploading

hi, I would like to upload the HPV16 W12E genome (AF125673) (human papilloma virus type 16 ) but I find it hard to be accepted by galaxy. Any suggestion where I can find the correct one? thanks, ib ___ The Galaxy User list should be used for

[galaxy-user] August 2012 Galaxy Update

Hello all The August 2012 Galaxy Update is now availableat http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_08. Highlights include - GCC2012 & GCC2013: slides are there; v