Re: [galaxy-user] git mirror

On Tue, Sep 4, 2012 at 5:57 PM, Luca Pireddu wrote: > Hello list. > > A simple question: is there a git mirror of the Galaxy repositories? If > not, what do git users here do to work with the Galaxy code base? > > Thanks, I don't think there is an official git mirror, but even if there was it wo

[galaxy-user] Please help to understand the square root of Jensen-Shannon divergence

Dear All, I am looking for the differential splicing events between cell types. However the Cuffdiff gives output using "the square root of Jensen-shannon divergence" to measure the difference. Although I tried my best to understand "the definition of the square root of Jensen-shannon divergen

[galaxy-user] git mirror

Hello list. A simple question: is there a git mirror of the Galaxy repositories? If not, what do git users here do to work with the Galaxy code base? Thanks, -- Luca Pireddu CRS4 - Distributed Computing Group Loc. Pixina Manna Edificio 1 09010 Pula (CA), Italy Tel: +39 0709250452 ___

Re: [galaxy-user] Downloading a zip file .......

Hello Neil, Single file zip archives are permitted to be uploaded and the dataset will uncompress and load into your history. If multi-file, Galaxy will only load the first dataset from the archive. If modified so that it never compresses, Galaxy will not be able to have access to the data -

Re: [galaxy-user] MACS- Duplicate reads removal

Hello Yanina, According to the MACS documentation (also linked from the tool form): http://liulab.dfci.harvard.edu/MACS/00README.html The option controlling duplicates is (quote): --keep-dup=KEEPDUPLICATES It controls the MACS behavior towards duplicate tags at the exact same location --