Re: [galaxy-user] replicates in cuffdiff output

2013-02-18 Thread Jeremy Goecks
Read group info isn't included in the Cuffdiff output right now. I've created a Trello card to fix this oversight: https://trello.com/c/FdUYdbIn Best, J. On Feb 18, 2013, at 12:32 PM, Johanna Sandgren wrote: > Hi, > > I am running cufflinks and cuffdiff using Galaxy. I am however wondering if

Re: [galaxy-user] Uploading large archive histories

2013-02-18 Thread Jesse Erdmann
After discussing this with Getiria, I think what is needed here is a way to use FTP to upload compressed histories from the import screen as is available from the upload data tool. The problem we're currently experiencing is that when we try to upload a compressed history where the compressed file

[galaxy-user] replicates in cuffdiff output

2013-02-18 Thread Johanna Sandgren
Hi, I am running cufflinks and cuffdiff using Galaxy. I am however wondering if it is not supposed to be output files from cuffdiff regarding each replicate. Anyone know why those (read.group-files) are not there, or when they will be if it is because of the version used in Galaxy. I find it ve