Re: [galaxy-user] [galaxy-dev] not enough memory space on my galaxy session

2013-03-08 Thread Jeremy Goecks
Hello, Apologies for the slow reply. I've moved this thread to the galaxy-user mailing list because it centers on using Galaxy rather than developing it. > 2. deleted the first files, like the first fastq files, but I'm affraid to > have an error messages Deleting your fastq files after you ha

[galaxy-user] Reminder: Galaxy Main & Test Server downtime for hardware relocation Thursday, March 14, 2013

2013-03-08 Thread Jennifer Jackson
Original Notice Date: Thursday, March 7, 2013 Reminder Notice Date: Friday, March 8, 2013 Greetings Galaxy Main & Test Users, The Galaxy Public Main Galaxy Server at http://main.g2.bx.psu.edu (usegalaxy.org) and Test Galaxy Server at http://te

Re: [galaxy-user] How should I include biological replicates in cufflink/cuffdiff?

2013-03-08 Thread Jeremy Goecks
> > I am dealing with a bacterium which has about 4000 genes. When I tried > Cuffmerge to merge everything with reference annotation, I got a merged file > of only 50 lines. If I left out the reference annotation file, Cuffmerge > returned me a merged file of 4000 lines (which is more reasonabl

[galaxy-user] Web Galaxy server and load

2013-03-08 Thread Ann Holtz-Morris, M.S.
HI, Does anyone know how to check whether the Galaxy server(s) load is really high? My alignments, only 200,000 paired end reads seemed to be taking a long time. I read through the archives, and the answers were that 1) alignments take a while and that the server load really affects the turnar