[galaxy-user] Early registration for GMOD meeting closes in one week

Hello, The GMOD meeting is in Cambridge, England on April 5-6 (right before the Biocurator meeting) and early registration closes March 21 (in one week). It is shaping up to be a good meeting with several interesting talks scheduled. Please try to make it! For more information on the meeting, s

[galaxy-user] Problem with workflow step ordering

When i create a GALAXY workflow the order of the steps in the summary are fine until the main pipeline diverges into multiple branches. Then the steps from the different branches get shuffled in the summary and it is difficult to see what is going on. Q. Is it possible to manually reorder step

[galaxy-user] Depth command in SAM tools

Dear all, I am a Phd student working on chicken genomics, with limited experience in the bio-informatics field. I performed an RNA-Seq experiment with single end 50 bp reads to find differential gene expressions between different groups. I have mapped this data with Tophat and used flagstat and

Re: [galaxy-user] Cuffdiff statistical calculations are inconsistent?

> The header of the Cuffdiff tool page says it is version 0.0.5 This version is the Galaxy tool wrapper version, not the tool version. (Yes, this is a usability issue.) You can find the tool version in the dataset's information panel by clicking on the 'i' icon. > Is there a way, or setting, on