Re: [galaxy-user] Map with BWA for Illumina is hung

Hi Jennifer, It looks like it finally ran yesterday. I guess the server was just very busy. --- Richard Casey, PhD CSU 970-492-4127 970-980-5975 richard.ca...@colostate.edu From: Jennifer Jackson [mailto:j...@bx.psu.ed

Re: [galaxy-user] trimming illumina reads from 3' without considering quality score

Hi Mathew, Please see the tool 'NGS: QC and manipulation -> FASTQ Trimmer by column'. Make sure your data is in ".fastqsanger" format first - either assigned or through grooming: See "FASTQ": http://wiki.galaxyproject.org/Support#Dataset_special_cases Take care, Jen Galaxy team On 5/1/13 7:

Re: [galaxy-user] Map with BWA for Illumina is hung

Hello Richard, The public Main Galaxy server is very busy right now. I didn't find an account associated with this email address. If you would like to send me your account email (a direct reply would be fine) - I can check the queue. Best, Jen Galaxy team On 4/30/13 7:36 AM, Casey,Richard wr

Re: [galaxy-user] Tophat for Illumina is not running

Hello Lilach, The public Main Galaxy server is very busy right now, but I do see your account in the queue (as I have since you first sent this email). We expect the processing time to improve soon. Meanwhile, the best strategy is to leave queued job alone and not stop/restart or they will mov

[galaxy-user] trimming illumina reads from 3' without considering quality score

Is it possible to trim certain number of bases from 3' end with taking into  consideration quality of reads. To explain it further, I want to remove 10bases from 3 ' end of all reads and keep first forty. Thanks ___ The Galaxy User list shou