Re: [galaxy-user] Bam QC and coverage

2013-09-06 Thread Joachim Jacob | VIB |
Hi Shamsher, Another alternative is to use bamqc from the qualimap suite. The wrapper you can find at: http://toolshed.g2.bx.psu.edu/view/joachim-jacob/qualimap_suite You need to install this tool in a local Galaxy, with the qualimap suite installed and perl (see README). Cheers, Joachim

Re: [galaxy-user] Bam QC and coverage

2013-09-06 Thread shamsher jagat
Joachim , Thanks that is exactly I was looking as Qualimap is exhausting memory. Thanks Geert. On Fri, Sep 6, 2013 at 12:32 AM, Joachim Jacob | VIB | joachim.ja...@vib.be wrote: Hi Shamsher, Another alternative is to use bamqc from the qualimap suite. The wrapper you can find at:

Re: [galaxy-user] For constructing workflow of workflows

2013-09-06 Thread Saket Choudhary
Hi Deblina, This is part of my Google Summer of Code Project. I should be able to wrap up in the coming 2 weeks. It might however take longer to get the changes onto galaxy-central. Saket On 6 September 2013 03:53, Jennifer Jackson j...@bx.psu.edu wrote: Hi Deblina, The way to track

[galaxy-user] Zooming in and out in Circster

2013-09-06 Thread Ian Donaldson
Sorry if I am missing some instructions somewhere, but how do you zoom out of a Circster plot? I have zoomed in by double clicking, but cannot work out how to zoom back out? Thanks, Ian ___ The Galaxy User list should be used for the

Re: [galaxy-user] For constructing workflow of workflows

2013-09-06 Thread patra
Hi Saket, Thank you very much for the information. Best, Deblina. On 2013-09-05 23:50, Saket Choudhary wrote: Hi Deblina, This is part of my Google Summer of Code Project. I should be able to wrap up in the coming 2 weeks. It might however take longer to get the changes onto