[galaxy-user] Questions regarding Circster visualization

Hi, I just noticed that Circos plots are now incorporated into Galaxy's visualization methods which is awesome! However, I'm a bit lost as to what kinds of data I can load into Circos and I cannot find much documentation, so I hope you guys can help out. 1. I tested it using a bigWig and a BED fi

Re: [galaxy-user] How do I remove "Histories shared with you by others"?

Dear Jen & Dan Thanks for looking into this and providing a quick fix. Best regards, Casey > On Feb 6, 2014, at 5:29 PM, Jennifer Jackson wrote: > > Hello again Casey, > > A correction has been created and it will be included in the next update to > the public server. The ticket with the d

Re: [galaxy-user] Help with Cuffdiff

Hi Maria, More details are needed to help. Would you like to share a history with me? You might also find the tutorials and other resources for RNA-seq analysis we have helpful. Many are linked from here: https://wiki.galaxyproject.org/Support#Tools_on_the_Main_server:_RNA-seq I've also added

Re: [galaxy-user] How do I remove "Histories shared with you by others"?

Hello again Casey, A correction has been created and it will be included in the next update to the public server. The ticket with the details is here: https://trello.com/c/wqQua5V4 We appreciate that you took the time to research and report the problem! Best, Jen Galaxy team On 2/6/14 8:07

[galaxy-user] Help with Cuffdiff

Hello, I am new to cuff diff and just got my data output back and it doesn't look like anything is statistically significant. There are three treatment groups with two biological replicates each group. I am not sure if I made an error somewhere along the line, need to adjust the parameters, or if

Re: [galaxy-user] How do I remove "Histories shared with you by others"?

Hi Casey, I was able to confirm this issue and we’ll work on a fix for it. Thanks for reporting. Thanks for using Galaxy, Dan On Feb 6, 2014, at 10:25 AM, Jennifer Jackson wrote: > Hi Casey, > > I just tested the UI "unsharing" for both of your cases and was unable to > replicate the pro

Re: [galaxy-user] How do I remove "Histories shared with you by others"?

Hi Casey, I just tested the UI "unsharing" for both of your cases and was unable to replicate the problem. Can you confirm that you are using the public Main Galaxy instance at http://usegalaxy.org ? And is this your account email? Please confirm and we can try to see what may be going on. F

[galaxy-user] How do I remove "Histories shared with you by others"?

Hello - I am trying to clean out my "Histories shared with you by others" page on the main public Galaxy server. I would like to remove old histories shared with me. I have tried two methods, neither of which allow me to remove these histories: 1. clicking the check box to a history shared w