Re: [galaxy-user] Filter Fastq

2013-05-09 Thread Casey,Richard
> From: Peter Cock [mailto:p.j.a.c...@googlemail.com] > Sent: Thursday, May 09, 2013 7:46 AM > To: Casey,Richard > Cc: galaxy-u...@bx.psu.edu > Subject: Re: [galaxy-user] Filter Fastq > > On Thu, May 9, 2013 at 12:27 PM, Casey,Richard > wrote: > > Hi, > > &

[galaxy-user] Filter Fastq

2013-05-09 Thread Casey,Richard
Hi, We have two Filter FASTQ jobs running on the Galaxy public server. Both jobs have been running for more than four days. This seems like an excessive amount of runtime. Do Filter FASTQ jobs normally take this long to run? Richard ___

Re: [galaxy-user] Map with BWA for Illumina is hung

2013-05-01 Thread Casey,Richard
ilto:j...@bx.psu.edu] Sent: Wednesday, May 01, 2013 12:25 PM To: Casey,Richard Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Map with BWA for Illumina is hung Hello Richard, The public Main Galaxy server is very busy right now. I didn't find an account associated with this email address. I

[galaxy-user] Map with BWA for Illumina is hung

2013-04-30 Thread Casey,Richard
Hi, when we try using Map with BWA for Illumina on the public server, it never starts running and sits in a queued state forever. We have jobs that have been queued for more than 5 days. Any ideas on why these jobs never start? --- Richard Casey, PhD CS