[galaxy-user] Raw counts from Galaxy

2013-05-17 Thread Els Willems
much. Regards, Els --- Ir. Els Willems KU Leuven Department of Biosystems Division Livestock - Nutrition - Quality Laboratory of Livestock Physiology Kasteelpark Arenberg 30 bus 2456 B - 3001 Heverlee T (+32) 016 32 17 29 F (+32) 016 32 19 94

[galaxy-user] raw count of genes

2013-04-11 Thread Els Willems
how I can get the raw data count out of galaxy in a tab-delimited file? I would like to perform a statistical analysis in other software, without the RPKM normalization that cufflinks offers. Thank you very much. Have a nice day. Yours Sincerely, Els --- Ir. Els Willems KU Leuven Department of

[galaxy-user] Depth command in SAM tools

2013-03-15 Thread Els Willems
. Have a nice day. Yours Sincerely, Els --- Ir. Els Willems KU Leuven Department of Biosystems Division Livestock - Nutrition - Quality Laboratory of Livestock Physiology Kasteelpark Arenberg 30 bus 2456 B - 3001 Heverlee T (+32) 016 32 17 29 F (+32) 016 32 19 94