Re: [galaxy-user] annotation file for cufflinks

This http://bioperl.org/pipermail/bioperl-l/2005-November/020109.html might help to convert gff to gtf. J From: galaxy-user-boun...@lists.bx.psu.edu [mailto:galaxy-user-boun...@lists.bx.psu.edu] On Behalf Of Gary Xie Sent: Friday, September 23, 2011 4:41 PM To: Peng, Tao Cc: galaxy-user

[galaxy-user] (no subject)

Hi Jeremy, I tried to run cufflinks to assemble transcripts after running Tophat against my own reference. This error was encountered. What was wrong? How to fix it? Error running cufflinks. [21:01:14] Inspecting reads and determining fragment length distribution. Processed 11130 loci.