Hi,
we are running distinct instances on 80 and 8080 -
when you use the 8080 instance - the url is built for /galaxy not :8080/galaxy
http://genome.ucsc.edu/cgi-bin/hgTables?GALAXY_URL=http%3A//genome.einstein.yu.edu/galaxy/tool_runnertool_id=ucs..
thus you cannot pass the data back to
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Hi,
is there by any chance a per application breakdown of the test-data structure?
best,
joe
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Enis,
a few things we came across:
a, local install
R - not the correct download url,
rpy - will this be fixed?
permissions:
the script seems to use sudo and galaxy interchangeably, which creates an issue
with permissions writing to folders.
Is there a way to install as galaxy user only?
Hi,
the cloud version is using Linux ip-10-68-42-15 2.6.32-308-ec2 #16-Ubuntu SMP
Thu Sep 16 15:25:39 UTC 2010 x86_64 GNU/Linux
what is the latest Ubuntu version we can use for a full unified install using
the tool and data scripts to populate both tools and indexes?
best,
joseph
Enis,
since we are bringing up VMs locally we can try both -
best,
joe
From: Enis Afgan [eaf...@emory.edu]
Sent: Thursday, July 21, 2011 2:05 PM
To: Joseph Hargitai
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] latest ubuntu version for full
Hi,
is there a best practices, to replace general SGE requests with requests
specific to applications -
did anyone actually build such request options to be part of the selectable
items in the apps menus?
best,
joe
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The Galaxy User
Hi,
just like universe..ini.cloud in bucket, is the assumption to edit this file
in the bucket? (
How about the tool directory edits on the regular mount? Will they be wiped on
a reboot?
Again, do we have a doc somewhere about the cloud version's persistence issues
as far as edits and data?
Hi,
setting the admin user in
/mnt/galaxyTools/galaxy-central/universe_wsgi.ini
did work after a simple restart of the galaxy service as user galaxy -
./runs.sh
However, when I restarted the cloud instance (rebooted from Amazon console) the
setting reverted to original.
Is there perhaps
]
Sent: Tuesday, June 28, 2011 11:46 AM
To: Joseph Hargitai
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] cloud instance drops settings on reboot
Hi Joe,
This is by design. In order to change the settings in universe_wsgi.ini, you
should edit file universe_wsgi.ini.cloud
in galaxy itself, but I do not think that is what you
are referring to.
joe
From: Enis Afgan [eaf...@emory.edu]
Sent: Tuesday, June 28, 2011 3:30 PM
To: Joseph Hargitai
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] cloud instance drops settings on reboot
throws this:
{updated: false}
From: Enis Afgan [eaf...@emory.edu]
Sent: Tuesday, June 28, 2011 6:02 PM
To: Oliver Hofmann; Joseph Hargitai
Cc: galaxy-user
Subject: Re: [galaxy-user] cloud instance drops settings on reboot
Well, now that I looked into it, about
same - looks nice and very useful.
best,
joe
From: Oliver Hofmann [ohofman...@gmail.com] on behalf of Oliver Hofmann
[ohofm...@hsph.harvard.edu]
Sent: Tuesday, June 28, 2011 7:29 PM
To: Enis Afgan
Cc: Joseph Hargitai; galaxy-user
Subject: Re: [galaxy
Thanks!
I'll read up on the url and we should discuss moving forward.
best,
joe
From: Ravi Madduri [madd...@mcs.anl.gov]
Sent: Tuesday, June 21, 2011 10:08 PM
To: Enis Afgan
Cc: Joseph Hargitai; galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] aspera
Hi,
anyone tried to install an aspera server for a galaxy cloud instance? The goal
would be to feed some local data faster to the instance.
best,
joe
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