Re: [galaxy-user] watching command line to a query

2013-08-30 Thread Maddhi, Srinivas
Hi Jen, This would be very useful for users who don't have access to Galaxy logs. Could you please describe in additional detail how (sequence of steps) to cause a tool to fail in order to make the bug icon appear ? I am assuming you can, through the method you suggested, cause a tool/job tha

Re: [galaxy-user] watching command line to a query

2013-08-27 Thread Maddhi, Srinivas
I don't believe so. Peter is right -- I forgot to mention that you would need read access to the log files on the server running Galaxy. It would be nice if Galaxy were able to display the command issued, unless it already does and I am not aware of it, without requiring such access (perhaps a

Re: [galaxy-user] watching command line to a query

2013-08-27 Thread Maddhi, Srinivas
Hi Lilach, One method would be by checking the contents of the log file for entries such as "submitting file /Groups/Galaxy/galaxy-dist/database/pbs/galaxy_48152.sh". The contents of the file listed contain the command line issues by Galaxy. From: lilach noy mailto:lilach...@gmail.com>> Date: T