[galaxy-user] Rscript not found when running shell script in Galaxy

it I get the following error: /path/to/script/shell_script.sh: line 26: Rscript: command not found Can anyone help? Thank you in advance, Makis Ladoukakis ___ The Galaxy User list should be use

[galaxy-user] How to get output images to appear in Galaxy

Dear Galaxy users, I have a tool which among other files it produces certain images in .png format. Does anyone know if there is a way to make them appear inside the "display data" interface? Thank you in advance, Efthymios Ladoukakis _

[galaxy-user] Tools won't go away even after deleting it from tool_conf.xml

Dear Galaxy users, Has anyone experienced this problem before? In my local instance of Galaxy on a server I've deleted the path of almost all sections with their corresponding tools from tool_conf.xml (wanting to leave my own customized section) but after a restart and a new run of the run.sh

Re: [galaxy-user] Trouble with BLAST+ and .loc file

the megablast tool still doesn't recognise the database. Am I missing something? Thank you in advance, Makis Ladoukakis > Date: Wed, 21 Mar 2012 10:21:16 + > Subject: Re: [galaxy-user] Trouble with BLAST+ and .loc file > From: p.j.a.c...@googlemail.com > To: makis4e...

[galaxy-user] Trouble with BLAST+ and .loc file

: database [build data] path nr_01_Mar_2012 nr 15 Mar 2012 /home/user/Desktop/nr.00/nr Nevertheless when i start galaxy the megablast tool can't recognise the database. Am I missing something? Thank you in advance Makis Ladou

[galaxy-user] Make Galaxy continue running when i close the browser

Dear Galaxy users, I have installed a local Galaxy instance on a server and I use it to run certain genomic assembly workflows. Nevertheless with larger datasets completion may take up to one day. How can i make Galaxy to continue the operation even when i close the browser? Is that possible o

[galaxy-user] Velvetoptimiser error

Dear Galaxy users, Has anyone worked with velvetoptimiser tool from the Tool shed? I have been trying both the stable and the test version of the velvetoptimiser tool and i keep getting the same error: Traceback (most recent call last): File "/home/ladoukef/galaxy_dist/tools/myTools/velvetop

[galaxy-user] Adding new tools in Galaxy

e FAQ. Thank you, Makis Ladoukakis ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the li

[galaxy-user] Adding new tools in Galaxy

e FAQ. Thank you, Makis Ladoukakis ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public serv