[galaxy-user] Can I call SNPs and Indels in Galaxy

2012-08-02 Thread Mathew Bunj
I have  two  DNA seq files for hg18 and want identify SNPs in each file as compare dto existing database and also want to find differences (seq variations) among two samples. I was wondering if I can do that or not in Galaxy (public server)?   I know I can use liftover to convert into hg19 if ne

Re: [galaxy-user] Can I call SNPs and Indels in Galaxy

2012-08-07 Thread Jennifer Jackson
Hello Mathew, The short answer is yes, Galaxy has many tools to do this type of analysis. If you are new to Galaxy, you will probably want to start in these places to get acquainted with the UI and tool organization: https://main.g2.bx.psu.edu/u/james/p/exercises http://wiki.g2.bx.psu.edu/Lear