Hello,
My name is Christopher Terranova and am a M.S student at the University of
Buffalo SUNY.I have been attempting to analyze my MACS data using Galaxy,
already
have my custom peaks on the UCSC Genome browser and have some specific
questions.
I am attempting to show how my peaks (and peak cen
Giuseppe,
Your ChipSeq data is already in fastq format. It appears to have Illunima
quality scores, so you'll need to use the NGS:QC and manipulation > FASTQ
Groomer tool, using 'Illumina 1.3+' as input and 'Sanger' quality format
as output.
As to using MACS, I've never used it before but you shoul
Hi,
I have illumina ChipSeq data in txt format with this structure:
@HWI-EAS225:8:1:1:58#0/1
NAGAGTGCCCGGGTTCAGTTCTCAGCACCCATGTGG
+HWI-EAS225:8:1:1:58#0/1
DMSSUSSTTTUTSRQRTTTSSSUS
@HWI-EAS225:8:1:1:1803#0/1
NCCATGGGAAGAGCTGGGCAGGCGGGCCGAGCGAAG
+HWI-EAS225:8:1:1:1803#0/1
DLSTTSKOUTRRTTS
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