Hello Geert,
To produce and work with VCF data, please see the tool groups 'NGS:
Variant Detection' and 'NGS: GATK Tools (beta)'. Each tools has
notations about input, outputs, and sources. We are developing
additional support within Galaxy for these tools as they move out of
beta status. For
Hi,
This might be an easy question, but I can't find the solution in the
standard galaxy tools it seems. How do I create a valid VCF file from a
(filtered) samtools mpileup output?
Thanks in advance !
Geert
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