Hello Wei,
The results do sound strange. The best advice to start with is to make
sure that you are up-to-date with both Galaxy and the RNA-seq tools and
using the best possible inputs.
1 . Make sure that you are running the latest distribution
Hi, Galaxy user.
I ran into a problem when using Cuffdiff 1.2.1 in Galaxy local instance to
check differential expressed genes in my samples.
I have 3 normals and 6 cancers samples, I did the following:
- After tophat for each samples, run cufflink with refseq annotation which
has 25266 genes and
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