John,
My best guess is that you are using bias correction but do not have the needed
reference genome(s) for the builds that you want to use. See this page for
instructions about setting up HTS tools; in particular, you'll need to set up
the sam_fa_indices.loc file:
https://bitbucket.org/galax
Hi galaxy dev team:
I just installed galaxy on my ubuntu box and tried to do RNA-seq analysis
according to Jeremy's excellent tutorial
http://main.g2.bx.psu.edu/u/jeremy/p/galaxy-rna-seq-analysis-exercise
however, I encountered following error messages when I was trying to execute
Cuffl
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