[galaxy-user] Data table named 'bowtie2_indexes' is required by tool but not configured

2012-10-18 Thread Sachit Adhikari
I am getting this error in Bowtie2 and Tophat2: Data table named 'bowtie2_indexes' is required by tool but not configured Data table named 'tophat2_indexes' is required by tool but not configured. How can I solve it? Thanks ___ The Galaxy Use

Re: [galaxy-user] Data table named 'bowtie2_indexes' is required by tool but not configured

2012-10-19 Thread Jeremy Goecks
You'll need to update the tool_data_table_conf.xml file in your Galaxy home directory. If you haven't made changes to the file, you can copy tool_data_table_conf.xml.sample to tool_data_table_conf.xml If you have made changes, add these entries to the file: -- value, dbkey, name, path

Re: [galaxy-user] Data table named 'bowtie2_indexes' is required by tool but not configured

2012-10-19 Thread Sachit Adhikari
Thanks but after adding those lines when I stop and started the server using --daemon mode, the server is not working? What might be the problem? On Fri, Oct 19, 2012 at 9:01 AM, Jeremy Goecks wrote: > You'll need to update the tool_data_table_conf.xml file in your Galaxy > home directory. > > If