Re: [galaxy-user] Depth of coverage error

Hello Sandrine, The sequence identifiers are a mismatch between the bam file and the custom reference genome. https://wiki.galaxyproject.org/Support#Reference_genomes I'll reply with more detail to your bug report about the same issue. Best, Jen Galaxy team On 2/10/14 6:09 AM, Sandrine Imbe

[galaxy-user] Depth of coverage error

Hi, I am using the "Depth of coverage on BAM files" tool from the NGS: GATK Tools but encounter problem. While part of the BAM files proceed successfully, some BAM files end proceeding with a systematic error (see below). The entire BAM file dataset was generated with the same deepseq analysis