Re: [galaxy-user] Exome seq work flow

2014-03-14 Thread Mathew Bunj
No I have not received any feedback as yet. Thanks On Friday, March 14, 2014 7:42 AM, Kristin Kernohan kristinkerno...@gmail.com wrote: Hi did anyone answer this? Id be curious to know as well thanks Kristin On Thu, Mar 13, 2014 at 10:22 PM, Mathew Bunj mathewb...@yahoo.com wrote: I

Re: [galaxy-user] Exome seq work flow

2014-03-14 Thread Björn Grüning
Hi, we are currently working on one pipeline. I can share if you are interested, but its not yet finished, parameter wise, but all tools should be there. We tried to stick to the GATK2 best-practise guide and are using snpeff for annotation. Cheers, Bjoern Am 15.03.2014 01:55, schrieb