Dear All,
I am looking for the differential splicing events between cell types.
Although I got a lot of helps from Jen and from protocols found online, I am
still not sure about some settings for Cufflink, Cuffmerge and Cuffdiff.
1) For Cufflink:
There is a setting for Bias Correction. I made
Jianguang,
If your input dataset(s) have a genome assigned (database) and that
genome is local to Galaxy (I believe this is true for your data, mm9,
correct?), then using bias correction would be an advantageous option to
make use of according to our experience and the tool authors in the
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