Re: [galaxy-user] Question about formattung mouse (mm9) GTF

Hello, The workflow is available at this location: http://main.g2.bx.psu.edu/u/jeremy/p/transcriptome-analysis-faq#faq5 The workflow specifically modifies Ensembl chromosome labels in a GTF file to be UCSC chromosome labels by adding a "chr" to the names ("1" -> "chr1"). This type of change is

[galaxy-user] Question about formattung mouse (mm9) GTF

I have read in the mailing list that you have a workflow which can modify the human GTF file so that it will be compatible with Top Hat. Will it also work with Ensembl mm9 GTF or there is a different work flow. Thanks ___ The Galaxy User lis