Re: [galaxy-user] copy number variation detcetion in Glaxay

2012-08-17 Thread Mathew Bunj
Thanks. >  > > >From: Jennifer Jackson >To: shamsher jagat >Cc: galaxy-user@lists.bx.psu.edu >Sent: Thursday, August 16, 2012 12:48 AM >Subject: Re: [galaxy-user] copy number variation detcetion in Glaxay > >Hello, > >The tool "FreeBayes" may be of i

Re: [galaxy-user] copy number variation detcetion in Glaxay

2012-08-16 Thread Erik Garrison
ools. > > Thanks. > > > *From:* Jennifer Jackson > *To:* shamsher jagat > *Cc:* galaxy-user@lists.bx.psu.edu > *Sent:* Thursday, August 16, 2012 12:48 AM > *Subject:* Re: [galaxy-user] copy number variation detcetion in Glaxay > > Hello, > > The tool "F

Re: [galaxy-user] copy number variation detcetion in Glaxay

2012-08-16 Thread Mathew Bunj
, August 16, 2012 12:48 AM Subject: Re: [galaxy-user] copy number variation detcetion in Glaxay Hello, The tool "FreeBayes" may be of interest. Please see the tool form for links to the primary tool documentation to see if the functionality will meet your needs. Best, Jen Galaxy team

Re: [galaxy-user] copy number variation detcetion in Glaxay

2012-08-16 Thread Jennifer Jackson
Hello, The tool "FreeBayes" may be of interest. Please see the tool form for links to the primary tool documentation to see if the functionality will meet your needs. Best, Jen Galaxy team On 8/15/12 4:46 AM, shamsher jagat wrote: Is there any tool/ combination of tools with in galaxy whic

[galaxy-user] copy number variation detcetion in Glaxay

2012-08-15 Thread shamsher jagat
Is there any tool/ combination of tools with in galaxy which can detect CNV. I have 100X paired sequencing data between cancer and normal. Thanks ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features