Re: [galaxy-user] input for GATK DepthOfCoverage

I fixed it, Thanks. It was because I aligned to different genomes in BWA and GATK steps 2012/4/3 Lilach Friedman > Hi Galaxy Team, > I'm trying to use GATK DepthOfCoverage, and to give a BAM file of alined > results as input. > > > My steps were: > 1. BWA alignment > 2. SAM-to-BAM > 3. rmdup. >

[galaxy-user] input for GATK DepthOfCoverage

Hi Galaxy Team, I'm trying to use GATK DepthOfCoverage, and to give a BAM file of alined results as input. My steps were: 1. BWA alignment 2. SAM-to-BAM 3. rmdup. when I'm trying to give 3 (rmdup results) as an input to GATK DepthOfCoverage, an error appears: " Sequences are not currently avai