Hello,
The error is indicating that the end of your dataset is larger than the
chromosome it is aligned to for this line (at least). This is expected
when attempting display of certain data types at UCSC.
This is a known issue. You can either remove these lines from your
dataset with tools i
Hi galaxy-users
When trying to display a set of chip microarray data in UCSC main, ,
we encounter this error:
Error(s):
Error line 38879 of
http://main.g2.bx.psu.edu/root/display_as?id=3221463&display_app=ucsc&authz_method=display_at:
chromEnd larger than chrom chr21_random size (1679928 > 167969
Hello Wen,
It's not necessary to send multiple emails to the mailing list; we track
incoming emails to ensure that we respond to all of them.
Your FPKM values do look high, but keep in mind that coverage is only part of
the FPKM calculation; it's also dependent on transcript length and the tota
Dear Galaxy team and users,
I have a question on the output by cufflinks on Galaxy.
I started with about 28M paired-end reads and mapped them to the reference
genome using Tophat on Galaxy. The aligned fragments were assembled by
cufflinks, again on Galaxy and I got an output with the first few
Dear Galaxy team and users,
I have a question on the output by cufflinks on Galaxy.
I started with about 28M paired-end reads and mapped them to the reference
genome using Tophat on Galaxy. The aligned fragments were assembled by
cufflinks, again on Galaxy and I got an output with the first few
5 matches
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