commit: ba27c5abd5a986dc687d272d91312f2374d9ae93 Author: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de> AuthorDate: Sat Nov 29 21:56:06 2014 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Nov 29 21:56:06 2014 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ba27c5ab
sys-cluster/mpe2: Add ebuild to overlay and bump version --- licenses/mpich2 | 39 ++++++++++ sys-cluster/mpe2/ChangeLog | 9 +++ sys-cluster/mpe2/metadata.xml | 5 ++ sys-cluster/mpe2/mpe2-1.3.0.ebuild | 142 +++++++++++++++++++++++++++++++++++++ 4 files changed, 195 insertions(+) diff --git a/licenses/mpich2 b/licenses/mpich2 new file mode 100644 index 0000000..a9216d4 --- /dev/null +++ b/licenses/mpich2 @@ -0,0 +1,39 @@ + + COPYRIGHT + +The following is a notice of limited availability of the code, and disclaimer +which must be included in the prologue of the code and in all source listings +of the code. + +Copyright Notice + + 2002 University of Chicago + +Permission is hereby granted to use, reproduce, prepare derivative works, and +to redistribute to others. This software was authored by: + +Mathematics and Computer Science Division +Argonne National Laboratory, Argonne IL 60439 + +(and) + +Department of Computer Science +University of Illinois at Urbana-Champaign + + + GOVERNMENT LICENSE + +Portions of this material resulted from work developed under a U.S. +Government Contract and are subject to the following license: the Government +is granted for itself and others acting on its behalf a paid-up, nonexclusive, +irrevocable worldwide license in this computer software to reproduce, prepare +derivative works, and perform publicly and display publicly. + + DISCLAIMER + +This computer code material was prepared, in part, as an account of work +sponsored by an agency of the United States Government. Neither the United +States, nor the University of Chicago, nor any of their employees, makes any +warranty express or implied, or assumes any legal liability or responsibility +for the accuracy, completeness, or usefulness of any information, apparatus, +product, or process disclosed, or represents that its use would not infringe +privately owned rights. diff --git a/sys-cluster/mpe2/ChangeLog b/sys-cluster/mpe2/ChangeLog new file mode 100644 index 0000000..b424437 --- /dev/null +++ b/sys-cluster/mpe2/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sys-cluster/mpe2 +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*mpe2-1.3.0 (29 Nov 2014) + + 29 Nov 2014; Marius Brehler <mar...@linux.sungazer.de> +metadata.xml, + +mpe2-1.3.0.ebuild: + Add to overlay and bump version diff --git a/sys-cluster/mpe2/metadata.xml b/sys-cluster/mpe2/metadata.xml new file mode 100644 index 0000000..55dd68a --- /dev/null +++ b/sys-cluster/mpe2/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>cluster</herd> +</pkgmetadata> diff --git a/sys-cluster/mpe2/mpe2-1.3.0.ebuild b/sys-cluster/mpe2/mpe2-1.3.0.ebuild new file mode 100644 index 0000000..b76e7ad --- /dev/null +++ b/sys-cluster/mpe2/mpe2-1.3.0.ebuild @@ -0,0 +1,142 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit eutils fortran-2 java-utils-2 toolchain-funcs + +MY_P=${P/_/} +DESCRIPTION="MPI development tools" +HOMEPAGE="http://www-unix.mcs.anl.gov/perfvis/download/index.htm"; +SRC_URI="ftp://ftp.mcs.anl.gov/pub/mpi/${PN%2}/${MY_P}.tar.gz"; + +LICENSE="mpich2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="minimal fortran threads debug" + +COMMON_DEPEND="!minimal? ( x11-libs/libXtst + x11-libs/libXi ) + || ( sys-cluster/openmpi[fortran?,threads?] + sys-cluster/mpich2[fortran?,threads?] )" + +DEPEND="!minimal? ( >=virtual/jdk-1.4 ) + ${COMMON_DEPEND}" + +RDEPEND=" +!minimal? ( >=virtual/jre-1.4 ) + ${COMMON_DEPEND}" + +S="${WORKDIR}"/${MY_P} +MPE_IMP="" + +# README: +# This ebuild is created to handle building with both mpich2 and openmpi. +# However, without empi (in the science overlay), and some further +# conversion to use mpi.eclass, we can only handle one implementation +# at a time. I still believe it's better to have the ebuild setup +# correctly in preperation. + +pkg_setup() { + fortran-2_pkg_setup + local i + + if has_version sys-cluster/openmpi; then + MPE_IMP=openmpi + elif has_version sys-cluster/mpich2; then + MPE_IMP=mpich2 + else + die "Unknown MPI implementation" + fi + + export JFLAGS="${JFLAGS} $(java-pkg_javac-args)" + + if [[ "${MPE_IMP}" == openmpi ]] && [ -z "${MPE2_FORCE_OPENMPI_TEST}" ]; then + echo + elog "Currently src_test fails on collchk with openmpi, hence" + elog "testing is disabled by default. If you would like to" + elog "force testing, please add MPE_FORCE_OPENMPI_TEST=1" + elog "to your environment." + echo + fi + + einfo "Building with support for: sys-cluster/${MPE_IMP}" +} + +src_prepare() { + # Don't assume path contains ./ + sed -i 's,\($MPERUN\) $pgm,\1 ./$pgm,' sbin/mpetestexeclog.in +} + +src_configure() { + local c="--with-mpicc=/usr/bin/mpicc" + + if use fortran; then + c="${c} --with-mpif77=/usr/bin/mpif77" + else + c="${c} --disable-f77" + fi + + if use minimal; then + c="${c} --enable-slog2=no --disable-rlog --disable-sample" + else + c="${c} --with-java2=$(java-config --jdk-home) --enable-slog2=build" + fi + + if [[ "${MPE_IMP}" == openmpi ]]; then + c="${c} --disable-rlog --disable-sample" + fi + + econf ${c} \ + --sysconfdir=/etc/${PN} \ + --datadir=/usr/share/${PN} \ + --with-htmldir=/usr/share/${PN} \ + --with-docdir=/usr/share/${PN} \ + --enable-collchk \ + --enable-wrappers \ + $(use_enable !minimal graphics) \ + $(use_enable threads threadlogging) \ + $(use_enable debug g) +} + +src_test() { + local rc + + cd "${S}" + if [[ "${MPE_IMP}" == mpich2 ]]; then + echo "MPD_SECRETWORD=junk" > "${T}"/mpd.conf + chmod 600 "${T}"/mpd.conf + export MPD_CONF_FILE="${T}/mpd.conf" + "${ROOT}"usr/bin/mpd -d --pidfile="${T}"/mpd.pid + elif [[ "${MPE_IMP}" == openmpi* ]] && [ -z "${MPE2_FORCE_OPENMPI_TEST}" ]; then + elog + elog "Skipping tests for openmpi" + elog + return 0 + fi + + # No parallel make: + # http://trac.mcs.anl.gov/projects/mpich2/ticket/1095#comment:1 + emake -j1 \ + CC="${S}"/bin/mpecc \ + FC="${S}"/bin/mpefc \ + MPERUN="${ROOT}/usr/bin/mpiexec -n 4" \ + CLOG2TOSLOG2="${S}/src/slog2sdk/bin/clog2TOslog2" \ + check; + rc=${?} + if [[ "${MPE_IMP}" == mpich2 ]]; then + "${ROOT}"usr/bin/mpdallexit || kill $(<"${T}"/mpd.pid) + fi + + return ${rc} +} + +src_install() { + # No parallel make: + # http://trac.mcs.anl.gov/projects/mpich2/ticket/1095#comment:1 + emake -j1 DESTDIR="${D}" install || die + rm -f "${D}"/usr/sbin/mpeuninstall || die +}
