Hello Everyone,
I am new in Gromacs. I am using gromacs for protein-ligand complex.
I have few question ?
1): how to fix water during simulation ?
2): how to fix protein and ligand during simulation ?
3) how to fix few crystal water molecule during simulation ?
4) how to fix specific water
:20:20 +1100
> From: Mark Abraham
> Subject: Re: [gmx-users] Regarding NVT & NPT ensemble
> To: Discussion list for GROMACS users
> Message-ID: <4f0c4924.5020...@anu.edu.au>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
> On 11/01/2012 1:14
Dear Sir,
I am new user in Gromacs. I am using Gromacs for protein-ligand complex.
If I am not wrong MD simulation have three part.
1. Energy Minimization
2. Equilibration phase
3. Production phase
After EM minimization we run Equilibration using (NVT & NPT ensemble).
I have little sily questi
Respected Sir,
Myself Haresh Ajani from National Institute of Pharmaceutical Education &
Research.
I am using gromacs version 4.5.3. I am working on molded Protein.
I am facing one problem in gromacs after minimization of the protein.
I have put my query here.
Fatal Error : Wrot
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entropy from this file.
any one know plz help me...
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Ajani Haresh
NIPER-IICB
KOLKATA
9836182127
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know plz help me.
thanks...
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Ajani Haresh
NIPER-IICB
KOLKATA
9836182127
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