http://pastebin.com/6t0y5mTX
So it's the same problem with io.h etc. if I just run cmake without any
mpi flags in my build directory.
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And if the zip file did not get through: http://de.pastebin.ca/2311103
2013/2/6 Christian H.
> Seems like my last message got lost because the CMakeError.log was too
> big, I attached that as a zip file.
>
>
>
> If i call sysconf() without any arguments it re
Seems like my last message got lost because the CMakeError.log was too big,
I attached that as a zip file.
If i call sysconf() without any arguments it returns 1.
Sysconf(_SC_NPROCESSOR_ONLN) complains that _SC_NPROCESSOR_ONLN is not
defined.
Also this comes up during make, which looks like trou
Head of .log:
Gromacs version:VERSION 5.0-dev-20121213-e1fcb0a-dirty
GIT SHA1 hash: e1fcb0a3d2768a8bb28c2e4e8012123ce773e18c (dirty)
Precision: single
MPI library:MPI
OpenMP support: disabled
GPU support:disabled
invsqrt routine:gmx_software_invsqrt(x)
CPU
None of the variables referenced here are set on my system, the print
statements are never executed.
What I did:
printf("Checking which processor variable is set");
#if defined(_SC_NPROCESSORS_ONLN)
ret = sysconf(_SC_NPROCESSORS_ONLN);
printf("case 1 ret = %d\n",ret);
#elif defined(_SC_N
>From the .log file:
Present hardware specification:
Vendor: GenuineIntel
Brand: Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
Family: 6 Model: 42 Stepping: 7
Features: aes apic avx clfsh cmov cx8 cx16 htt lahf_lm mmx msr nonstop_tsc
pcid pclmuldq pdcm popcnt pse rdtscp sse2 sse3 sse4.1 sse4.2 sss
Hi,
I am using the latest git version of gromacs, compiled with gcc 4.6.2 and
openmpi 1.6.3.
I start the program using the usual mpirun -np 8 mdrun_mpi ...
This always leads to a warning:
Using 1 MPI process
WARNING: On node 0: oversubscribing the available 0 logical CPU cores per
node with 1 MPI
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