Re: [gmx-users] g_anaeig & pymol

2010-07-07 Thread Daniel Seeliger
> PS: the 5 first eigenvectors don't account for > 80% of the total motility, > so could this be my problem? > > > Thank you, > > Carla > -- Dr. Daniel Seeliger Computational Biomolecular Dynamics Group Max-Planck-Institute for Biophysical Chemistry Tel. +49 (0) 551-201

Re: [gmx-users] Free Energy calculations of peptide-protein binding

2010-07-05 Thread Daniel Seeliger
> > 7) Are there perhaps such amino acid variants already built? > > > > Finally, some technicalities: > > > > 8) I have seen the sc-alpha parameter (when sc-power = 1) given the > values 1.0, 0.7 and 0.5. What is recommended? > > 9) Should I emplo

Re: [gmx-users] correct processing of #define statements by grompp in gromacs 4.0.2 requires exactly one space after #define

2008-11-26 Thread Daniel Seeliger
> > gmx-users mailing listgmx-users@gromacs.org > > http://www.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search before > > posting! Please don't post (un)subscribe requests to