[gmx-users] Coupling Molecule type in *mdp file for Free Energy Simulation

be much appreciated. Cheers, Jackson Chief Elk Graduate Student The University of Montana Biophysics and Biochemistry -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists

[gmx-users] grompp is adding a bond in my model that should not be there

it was not in the input *.gro file to grompp. Please help. Jackson Chief Elk Graduate Student in Biophysics and Biochemistry The University of Montana Missoula, MT -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http

Re: [gmx-users] grompp is adding a bond in my model that should not be there

in VMD. After 5ns of unrestrained MD, the two coils are clearly connected by looking at the output .gro file in VMD. Weird. On Sun, Mar 25, 2012 at 9:48 PM, Mark Abraham mark.abra...@anu.edu.auwrote: On 26/03/2012 12:20 PM, Jackson Chief wrote: I made a model of a receptor protein, bilayer

[gmx-users] Error when performing grompp on lipid bilayer modeled with CHARMM27

. Please give me some advice on how to proceed further. Thank you, Jackson Chief Elk -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't