Re: [gmx-users] How to construct mixed lipid bilayer

Let me correct myself :). Its pre-equilibrated. Not pretty equilibrated. :) On Nov 13, 2013 7:23 PM, "Arun kumar V" wrote: > Start with packmol if you want to start from scratch. Or else get a pretty > equilibrated mixed lipid bilayer if available somewhere on web. > On N

Re: [gmx-users] How to construct mixed lipid bilayer

Start with packmol if you want to start from scratch. Or else get a pretty equilibrated mixed lipid bilayer if available somewhere on web. On Nov 13, 2013 6:45 PM, "Nikhil Agrawal" wrote: > Dear All, > > can anyone tell me how to construct mixed lipid bilayer in gromacs > > id possible also provi

Re: [gmx-users] Simulation of only Lipid Bilayer

On Tue, Apr 6, 2010 at 5:05 PM, Justin A. Lemkul wrote: > > > Arun kumar V wrote: > >> Try PRODRG server to build the molecule as well as to get topology file. >> Though you might have to be careful in using this topology file. >> >> > If by "be caref

Re: [gmx-users] Simulation of only Lipid Bilayer

Try PRODRG server to build the molecule as well as to get topology file. Though you might have to be careful in using this topology file. Arun Saumya wrote: Hi all, Well, I have been trying to make lipid bilayers using genconf of gromacs from a single lipid molecule. Can anyone tell me how t

[gmx-users] deform option for shear simulation of monoatomic fluids - incorrect velocity profile

Dear All, I am using GROMACS to conduct Non-equillibrium MD on coarse grained water (Parameters from S J Marrink) and also SPC water using DEFORM option (Kind of Lees-Edwards boundary conditions). I used different deformation rates from 0.005 to 0.05 for XZ plane. But my problem is t

[gmx-users] CVS code needed

Hai all, Our campus network is behind firewall because of which I cant use CVS pserver.. And I dont know any alternative how to get current CVS development code. Can anyone of you tell me how to get gromacs current CVS source code?? I will be grateful even if anyone of u send me tar.gz fi