See AFM pulling description in manual. AFM means "Atomic force microscopy". That`s what you neeed).
-----Original Message----- From: "huifang liu" <[EMAIL PROTECTED]> To: gmx-users@gromacs.org Date: Thu, 9 Oct 2008 14:09:05 +0800 Subject: [gmx-users] how to use gromacs for steered molecular dynamics(SMD) > > Hi, gmx-users > > i want to use gromacs to pull a small ligand through a protein channel and > study the interaction between the ligand and the protein during this > process. However, i have not found out any useful information about steered > molecular dynamics(SMD) using Gromacs software. > > What are the differences between SMD and general MD in using Gromacs and how > to set up the related parameters? > > Thanks a lot. > > Dove. > > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > Nilov Dmitri _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
