RE: [gmx-users] Temperature Histogram

2012-11-18 Thread Samadashvili Nino
: Wednesday, November 14, 2012 2:18 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] Temperature Histogram On 11/14/12 7:10 AM, Samadashvili Nino wrote: > Dear Justin, > > I have been looking for some option to calculate the average temperature, > locally in my system. I

RE: [gmx-users] Pull code, Velocity distribution

2012-11-17 Thread Samadashvili Nino
[gmx-users-boun...@gromacs.org] on behalf of Justin Lemkul [jalem...@vt.edu] Sent: Friday, November 02, 2012 5:04 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] Pull code, Velocity distribution On 11/2/12 10:52 AM, Samadashvili Nino wrote: > Hello, > > I have

RE: [gmx-users] Temperature Histogram

2012-11-14 Thread Samadashvili Nino
: Wednesday, November 07, 2012 7:16 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] Temperature Histogram On 11/7/12 11:42 AM, Samadashvili Nino wrote: > Hello, > >I would like to calculate temperature in my system along the axis. Could > you please tell me if there

[gmx-users] Temperature Histogram

2012-11-07 Thread Samadashvili Nino
Hello, I would like to calculate temperature in my system along the axis. Could you please tell me if there is a way to make a temperature histogram with Gromacs? Thank you for your attention. Cheers, Nino-- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/lis

RE: [gmx-users] Pull code, Velocity distribution

2012-11-05 Thread Samadashvili Nino
[jalem...@vt.edu] Sent: Friday, November 02, 2012 5:04 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] Pull code, Velocity distribution On 11/2/12 10:52 AM, Samadashvili Nino wrote: > Hello, > > I have been using the pull code for friction calculations. I am not

[gmx-users] Pull code, Velocity distribution

2012-11-02 Thread Samadashvili Nino
Hello, I have been using the pull code for friction calculations. I am not doing umbrella sampling but just pulling one slab of crystal on top of another with the constant velocity. I would like to know how Gromacs is calculating the pulling force (pullf.xvg) during sliding. Is the pul