[gmx-users] How to view and analysis the result trajectory of g_covar?

2006-04-24 Thread Shanjie Huang
Hi dear friends, I just get trajectory files using g_covar. But how can I view this .trr file? I tried VMD and gOpenmol, etc and do not work. Thanks. SJ Huang -- Shanjie Huang [EMAIL PROTECTED] -- http://www.fastmail.fm - A fast, anti-spam email service

[gmx-users] Why my protein always falls out of the water box?

2006-03-13 Thread Shanjie Huang
? But I am worry about the extra constrain would interfere my MD result, for in the normal situation there should be no constrains. Thanks. -- Shanjie Huang [EMAIL PROTECTED] -- http://www.fastmail.fm - A no graphics, no pop-ups email service