[gmx-users] pdb file error

Hello, I'm new in Gromacs. I'm using gromacs 4.5.3. I need help with pdb format. I use to convert my file by PRODRG and MN.CONVERT. I'm trying to create a topology file from the pdb using the pdb2gmx. I get an error. My molecules are quaternary ammonium salts. My pdb file by MN. CONVERT:

Re: [gmx-users] pdb file error

@gromacs.org Wysłane: środa, 22 sierpień 2012 13:50:11 Temat: Re: [gmx-users] pdb file error On 8/22/12 7:44 AM, Sylwia Chmielewska wrote: Hello, I'm new in Gromacs. I'm using gromacs 4.5.3. I need help with pdb format. I use to convert my file by PRODRG and MN.CONVERT. I'm trying to create

Re: [gmx-users] pdb file error

Thanks. Sylwia - Oryginalna wiadomość - Od: Justin Lemkul jalem...@vt.edu Do: Discussion list for GROMACS users gmx-users@gromacs.org Wysłane: środa, 22 sierpień 2012 14:56:16 Temat: Re: [gmx-users] pdb file error On 8/22/12 8:48 AM, Sylwia Chmielewska wrote: Thank you for your prompt

Re: [gmx-users] problem with gromacs

: recipe for target `all-recursive' failed make: *** [all-recursive] Error 1 What have I done now? Sylwia Chmielewska - Oryginalna wiadomość - Od: Mark Abraham mark.abra...@anu.edu.au Do: Discussion list for GROMACS users gmx-users@gromacs.org Wysłane: niedziela, 8 styczeń 2012 23:37:42 Temat

[gmx-users] problem with gromacs

make[1]: Leaving directory `/home/Sylwia/gromacs-4.5.5/src' Makefile:347: recipe for target `install-recursive' failed make: *** [install-recursive] Error 1 $ source /usr/local/gromacs/bin/GMXRC -bash: /usr/local/gromacs/bin/GMXRC: No such file or directory Thanks for any help. Sylwia Chmielewska

Re: [gmx-users] problem with access to Gromacs after installation

Hello, I did what is in the access GROMACS after instalation. But I still do not have access. What sholud I do, now? Is it possible that the computer does not have some requirements and the program fails to start? Maybe I will try to install older versions. Please help. Sylwia Chmielewska

[gmx-users] problem with access to Gromacs after installation

Hello, I installed Gromacs 4.5.5 by Cygwin, then I can not get access to GROMACS after installation. With cygwin I installed this packets: perl, utils, devel, libs, math and system . Then I done everything what is wrote in instructions. Please help Sylwia Chmielewska -- gmx-users mailing