Fw: [gmx-users] ***using output of dl_poly in gromacs??***

2013-06-26 Thread hamid mosaddeghi
: David van der Spoel sp...@xray.bmc.uu.se To: gmx-users@gromacs.org Sent: Wednesday, 26 June 2013, 11:10 Subject: Re: [gmx-users] ***using output of dl_poly in gromacs??*** On 2013-06-25 21:52, hamid mosaddeghi wrote: Dear all I did some bio simulation  by dl_poly ,is it possible use gromacs

[gmx-users] ***using output of dl_poly in gromacs??***

2013-06-25 Thread hamid mosaddeghi
Dear all   I did some bio simulation  by dl_poly ,is it possible use gromacs for analysis data?     Best Of Luck -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at

[gmx-users] Re: gromacs VERSION 4.0.7-There is no domain decomposition.....

2013-03-10 Thread Hamid Mosaddeghi
force field in this versiom nad need to work with it do you think I go to new version, don't get this error? Best Regards Hamid Mosaddeghi -- View this message in context: http://gromacs.5086.n6.nabble.com/Re-gromacs-VERSION-4-0-7-There-is-no-domain-decomposition-tp5006247p5006251.html Sent

[gmx-users] error in gromacs 4.0.7-Source code file: domdec.c, line: 5888

2013-03-09 Thread Hamid Mosaddeghi
or not? I get this error in NVT (Em run without error. Best Regards. Hamid Mosaddeghi -- View this message in context: http://gromacs.5086.n6.nabble.com/error-in-gromacs-4-0-7-Source-code-file-domdec-c-line-5888-tp5006245.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com

Re: [gmx-users] calculate the size of protein

2013-02-16 Thread hamid mosaddeghi
Hi if you found optimum size for your protein , you must use VMD --- Tk console , I done it for commands, please see manual of VMD or mailing list. Best Regards Hamid Mosaddeghi From: Tsjerk Wassenaar tsje...@gmail.com To: Discussion list for GROMACS

[gmx-users] Re: make a movie from vmd

2013-02-14 Thread Hamid Mosaddeghi
You can use VideoMach software for this purpose. this software recommended by VMD. -- View this message in context: http://gromacs.5086.n6.nabble.com/make-a-movie-from-vmd-tp5004548p5005546.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list

[gmx-users] Re: au-protein separate minimization

2013-01-19 Thread Hamid Mosaddeghi
) with protein with copling of two or three softwares. best regards hamid mosaddeghi -- View this message in context: http://gromacs.5086.n6.nabble.com/au-protein-separate-minimization-tp5004700p5004702.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list