[gmx-users] error while running pdb2gmx

2013-11-13 Thread hasthi
, there is no separate entry for OXT there.When I did the simulation for the same protein prior phosphorylation I did not get this error. What is the reason for this and how should I rectify this error? Please help me with this regard Regards, Hasthi -- gmx-users mailing listgmx-users

[gmx-users] Regarding lipid bilayer

2013-10-07 Thread hasthi
Dear All, I am trying to follow lipid bilayer simulation tutorial,I am getting struck at energy minimization same step after generating system_inflated.gro file. I get the same error, Fatal error: Invalid line in system_inflated.gro for atom 6439: 25.67360 25.77400 6.59650 I

[gmx-users] Regarding lipid bilayer simulation

2013-10-05 Thread hasthi
25.77400 6.59650 25.67360 25.77400 6.59650 (This is the box vectors which comes in the system_inflated.gro).I am clueless about this error. What might be the probable reason for this error?? Thanks in advance for the suggestions. Regards, Hasthi Student -- gmx-users mailing listgmx-users