Did you try NA or CL.
All caps worked for me last time I used this.
Egy
On Dec 11, 2011, at 4:17 AM, Setare Jiji wrote:
Hi,
Thanks for your responding.
I checked my ions.itp file in which file sodium and chlorine ions
are as Na and Cl form.
Thus, I used genion as follows:
genion -s ions.tpr -o 1AKI_solv_ions.gro -p topol.top -nname Cl -nn
8 -pname Na
Unfortunately, I encountered same fatal error.
any help will highly appreciated.
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