[gmx-users] [gmx-user]Error by pdb2gmx

2010-05-27 Thread 佘安奇
Dear Editors: I used gromacs version 4.0.7. I update ffG45a3.rtp to include my molecule with its rtp in the attached file DRG.txt.And the pdb file of my molecule is mol.txt and also attached. When I used the following command,there is an error! pdb2gmx_mpi -ff G45a3 -f iso-C16.PDB Opening

RE: [gmx-users] [gmx-user]Error by pdb2gmx

2010-05-27 Thread Dallas B. Warren
Subject: [gmx-users] [gmx-user]Error by pdb2gmx Dear Editors: I used gromacs version 4.0.7. I update ffG45a3.rtp to include my molecule with its rtp in the attached file DRG.txt.And the pdb file of my molecule is mol.txt and also attached. When I used the following command,there is an error

[gmx-users] [gmx-user]Error by pdb2gmx

2010-05-19 Thread 佘安奇
Dear Yanmei Song: I used gromacs version 3.3.1. I update ffG45a3.rtp to include my molecule. When I run pdb2gmx using my molecules with the command:   pdb2gmx -f min_C16.pdb -o C16.pdb -p topol.top -ff G45a3    I got the error message:   Opening library file ffG45a3.rtp   Opening library file 

Re: [gmx-users] [gmx-user]Error by pdb2gmx

2010-05-19 Thread Mark Abraham
- Original Message - From: 佘安奇   she_an...@yahoo.cn Date: Wednesday, May 19, 2010 16:17 Subject: [gmx-users] [gmx-user]Error by pdb2gmx To: gmx-users@gromacs.org --- | Dear Yanmei Song: I used gromacs version 3.3.1. I update