Re: [gmx-users] Re: freeze the particular residues in NPT-NVT

2013-03-21 Thread Justin Lemkul
On 3/21/13 2:12 AM, 라지브간디 wrote: p{margin:0;padding:0;} Dear Justin, I have checked my index.ndx file and it doesnt have any atoms close to 37872 atoms. I am bit confused why its happening. There is some colossal mismatch between your coordinates, topology, and/or index file. I wou

[gmx-users] Re: freeze the particular residues in NPT-NVT

2013-03-20 Thread 라지브간디
p{margin:0;padding:0;} Dear Justin, I have checked my index.ndx file and it doesnt have any atoms close to 37872 atoms. I am bit confused why its happening. Contents of index file fz.ndx -- Nr. Group #Entries FirstLa

Re: [gmx-users] Re: freeze the particular residues in NPT-NVT

2013-03-20 Thread Justin Lemkul
On Wed, Mar 20, 2013 at 9:40 AM, 라지브간디 wrote: > > p{margin:0;padding:0;} > > > Thanks for your mail Justin. > > > I encountered the another problem after i didn't delete the whole part > (protein, system, non-prptein..etc) in index.ndx file. > > > Fatal error: > 37872 atoms are not part of any of

[gmx-users] Re: freeze the particular residues in NPT-NVT

2013-03-20 Thread 라지브간디
p{margin:0;padding:0;} Thanks for your mail Justin. I encountered the another problem after i didn't delete the whole part (protein, system, non-prptein..etc) in index.ndx file. Fatal error: 37872 atoms are not part of any of the T-Coupling groups These are my NVT.mdp file : title