Re: [gmx-users] .tdr file not created

2011-03-01 Thread sakthi kumaran
Dear Sir, I copied the tutor folder to some local path(say Dektop) and tried to execute from there. So the problem of secyurity issues with acces previleges won,t be there I think. BUt still I am not able to run the examples.Whether any installation problems or I have to reinstall the

Re: [gmx-users] .tdr file not created

2011-03-01 Thread Mark Abraham
On 03/01/11, sakthi kumaran persak...@gmail.com wrote: Dear Sir,    I copied the tutor folder to some local path(say Dektop) and tried to execute from there. So the problem of secyurity issues with acces previleges won,t be there I think. BUt still I am not able to run the

Re: [gmx-users] .tdr file not created

2011-03-01 Thread sakthi kumaran
Sorry for making my statement unclear. I copied the tutor folder to desktop and tried to run it from there. But when I entered the grompp -v command as mentioned in the manual, the .tdr file is not getting created. So without the .tdr files the successive commands are not working. So is the

Re: [gmx-users] .tdr file not created

2011-03-01 Thread Mark Abraham
On 03/01/11, sakthi kumaran persak...@gmail.com wrote: Sorry for making my statement unclear.   I copied the tutor folder to desktop and tried to run it from there. But when I entered the grompp -v command as mentioned in the manual, the .tdr file is not getting created. So without

Re: [gmx-users] .tdr file not created

2011-03-01 Thread Justin A. Lemkul
sakthi kumaran wrote: Sorry for making my statement unclear. I copied the tutor folder to desktop and tried to run it from there. But when I entered the grompp -v command as mentioned in the manual, the .tdr file is not getting created. So without the .tdr files the successive commands

Re: [gmx-users] .tdr file not created

2011-03-01 Thread sakthi kumaran
Sorry. I will make my statements clear here after. here is the terminal output after executing grompp -v :-) G R O M A C S (-: Great Red Oystrich Makes All Chemists Sane :-) VERSION 4.0.7 (-: Written by

Re: [gmx-users] .tdr file not created

2011-03-01 Thread Justin A. Lemkul
sakthi kumaran wrote: Sorry. I will make my statements clear here after. here is the terminal output after executing grompp -v :-) G R O M A C S (-: Great Red Oystrich Makes All Chemists Sane :-) VERSION 4.0.7

Re: [gmx-users] .tdr file not created

2011-02-28 Thread Justin A. Lemkul
sakthi kumaran wrote: hi I installed gromacs through the synaptics package manager in ubuntu 10.10 Since I am new to linux. So after installation when I tried to run the example tutorials available in tutor folder, its not running. When I tried to run the program water the .tdr file is

[gmx-users] .tdr file not created

2011-02-27 Thread sakthi kumaran
hi I installed gromacs through the synaptics package manager in ubuntu 10.10 Since I am new to linux. So after installation when I tried to run the example tutorials available in tutor folder, its not running. When I tried to run the program water the .tdr file is not created while executing