Re: [gmx-users] A confusion about domain decomposition

2010-06-20 Thread Justin A. Lemkul
Amir Marcovitz wrote: Hi all, I'm trying to run a parallel Job for a system of dummy atoms that arranged as 2 surface (each is 6X6 atom surface- with bonds that i defined between them) the system is solvated in a box of dimensions 4.5nm X 6.5nm X 4.5nm with salt, minimized and equlibrated

[gmx-users] A confusion about domain decomposition

2010-06-20 Thread Amir Marcovitz
Hi all, I'm trying to run a parallel Job for a system of dummy atoms that arranged as 2 surface (each is 6X6 atom surface- with bonds that i defined between them) the system is solvated in a box of dimensions 4.5nm X 6.5nm X 4.5nm with salt, minimized and equlibrated fine. however, when trying to