Dear GROMACS specialists,
How to convert Coarse Grain Martini
to FG martini on Gromacs 4.5.4 version .
( And how to compile the source given in Martini
home page with 4.5.4 version as they mention only
Gromacs 3.3.1 version)
Please give the valuable advice..
--
gmx-users
Either you develop your own version of the mapping or I guess you have
to use the old version...sorry, but I'm struggling with it right now
and I understand that it can be quite problematic.
Francesca
2012/3/9 rama david ramadavidgr...@gmail.com:
Dear GROMACS specialists,
How to
Yes unfortunately the transformation is only inplemented in the version
available on the martini page.
On Mar 9, 2012, at 10:30, francesca vitalini francesca.vitalin...@gmail.com
wrote:
Either you develop your own version of the mapping or I guess you have
to use the old version...sorry,
Dear ,
I do MD simulation with Martini Force Field. There are about 2048 DPPCs in
my system. But I don't know how many.water molecules should be added to
system of (25 25 17)nm . Is it important that the ratio of water/DPPC for
DPPC behavior? Can I add water arbitrarily, such as 7 or more?
The first ting to do would be to read the later papers describing the
philosophy
of the force field. There you'll find clear examples of how small
molecules can
be parameterized.
This goes in two main steps: i) geometrization: define the number of
beads,
bonds, angles, dihedrals to
Hi MARTINI forcefield users,
I am very interesting in using the MARTINI forcefield for simulating my
molecules, But I am not very familiar with it. So I hope some kind
people can help me about its application.
I want to know if It is suitable for the molecules of attached figures. It
have TWO
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