Re: [gmx-users] Atomtype OW_tip4p not found

2012-06-07 Thread Amir Abbasi
From: Justin A. Lemkul jalem...@vt.edu To: Discussion list for GROMACS users gmx-users@gromacs.org Sent: Wednesday, June 6, 2012 4:08 PM Subject: Re: [gmx-users] Atomtype OW_tip4p not found On 6/6/12 7:36 AM, Amir Abbasi wrote

Re: [gmx-users] Atomtype OW_tip4p not found

2012-06-07 Thread Justin A. Lemkul
; Discussion list for GROMACS users gmx-users@gromacs.org mailto:gmx-users@gromacs.org *Sent:* Wednesday, June 6, 2012 3:58 PM *Subject:* Re: [gmx-users] Atomtype OW_tip4p not found On 6/6/12 7:19 AM, Amir Abbasi wrote: Hi! I use tleap to generate topology file of a RNA molecule

[gmx-users] Atomtype OW_tip4p not found

2012-06-06 Thread Amir Abbasi
Hi! I use tleap to generate topology file of a RNA molecule with parmbsc0 ff. Then I generate .gro and .top files of that with amb2gmx.pl. I'm manually add this lines to .top file ; Include water topology #include amber99sb.ff/tip4p.itp ; Include topology for ions #include

Re: [gmx-users] Atomtype OW_tip4p not found

2012-06-06 Thread Justin A. Lemkul
On 6/6/12 7:19 AM, Amir Abbasi wrote: Hi! I use tleap to generate topology file of a RNA molecule with parmbsc0 ff. Then I generate .gro and .top files of that with amb2gmx.pl. I'm manually add this lines to .top file ; Include water topology #include amber99sb.ff/tip4p.itp ; Include topology

Re: [gmx-users] Atomtype OW_tip4p not found

2012-06-06 Thread Justin A. Lemkul
:58 PM *Subject:* Re: [gmx-users] Atomtype OW_tip4p not found On 6/6/12 7:19 AM, Amir Abbasi wrote: Hi! I use tleap to generate topology file of a RNA molecule with parmbsc0 ff. Then I generate .gro and .top files of that with amb2gmx.pl http://amb2gmx.pl. I'm manually add this lines