Re: [gmx-users] Attempting small molecule . . .

2006-08-06 Thread Esther Caballero-Manrique
On Sun, 6 Aug 2006 14:51:34 -0700 (PDT), Marc Charendoff <[EMAIL PROTECTED]> wrote: > Hey All, > > I'm in the middle of trying to perform a MD sim on a > homoserine lactone. I built the molecule and ran it > through the PRODRG server and retrieved the .gro and > .itp files for processing. I call

[gmx-users] Attempting small molecule . . .

2006-08-06 Thread Marc Charendoff
Hey All, I'm in the middle of trying to perform a MD sim on a homoserine lactone. I built the molecule and ran it through the PRODRG server and retrieved the .gro and .itp files for processing. I call grompp as such: grompp -f minim.mdp -c AHLFIN.GRO -p topol.top -o input.tpr It returns the foll