Re: [gmx-users] CG (MARTINI) parameters for RNA

Hi Tom, Thanks for your replay. From the paper (DNA and lipid bilayers: self-assembly and insertion. J. Royal Soc. Int. 5, S241-S250, 2008. ) I understand that the DNA CG particles where identical to the one used for lipids and protein, am I correct? Also, they had used elastic network to hol

Re: [gmx-users] CG (MARTINI) parameters for RNA

Hi, The DNA parameters for use with the MARTINI forcefield are not publicly available to download at the moment, however they will be available very soon. I (or someone else from the Khalid group) will let the list know when and where they have been made available. Cheers Tom Itamar Kass w

[gmx-users] CG (MARTINI) parameters for RNA

Shalom all, I wish to try and simulate a protein with few RNA bases attached. As I favour speed over accuracy in this case I wish to use the MARTINI model. I could not find RNA/DNA parameters, but noticed that on the site there is a reference to Khalid S, Bond PJ, Holyoake J, Hawtin RW, Sansom MS